Como instalar NetCDF? Estou tendo problemas na intalação .

araujofilhoecology · 09 de Janeiro de 2013, 11:10

>Tenho que instalar o NetCDF para rodar um modelo.
>Fiz o download do netcdf-4.1.3 e descompactei, mas quando dou o ./configure aparece o seguinte erro:

paulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ls
acinclude.m4 config.sub fortran lib_flags.am Makefile.in nctest stamp-h1
aclocal.m4 configure h5_test liblib man4 nc_test test_prog.c
compile configure.ac include libsrc missing nc_test4 test_prog.F
comps.txt COPYRIGHT INSTALL libsrc4 nc-config netcdf.pc test_prog.f90
config.guess cxx install-sh libtool nc-config.in netcdf.pc.in udunits
config.h cxx4 libcdmr ltmain.sh ncdap_test nf_test VERSION
config.h.in depcomp libcf m4 ncdump oc
config.log examples libdap2 Makefile ncgen README
config.status f90 libdispatch Makefile.am ncgen3 RELEASE_NOTES
paulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ./configure
configure: netCDF 4.1.3
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
configure: checking user options
checking whether CXX is set to ''... no
checking whether FC is set to ''... no
checking whether F90 is set to ''... no
checking whether a NCIO_MINBLOCKSIZE was specified... 256
checking whether udunits is to be built... no
checking if fsync support is enabled... yes
checking whether extra valgrind tests should be run... no
checking whether we should try to build netCDF-4... yes
checkinpaulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ./configureg whether libcf is to be built... no
checking whether reading of HDF4 SD files is to be enabled... no
checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no
checking whether new netCDF-4 C++ API is to be built... no
checking whether extra example tests should be run... no
checking whether parallel IO tests should be run... no
checking whether a default chunk size in bytes was specified... 4194304
checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
checking whether a number of chunks for the default per-variable cache was specified... 10
checking whether a default file cache size for HDF5 was specified... 4194304
checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
checking whether a default cache preemption for HDF5 was specified... 0.75
checking whether netCDF-4 logging is enabled... no
checking whether cdmremote client is to be built... no
checking whether DAP client is to be built... yes
checkinpaulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ./configureg for style of include used by make... GNU
checking for gcc... icc
checkinpaulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ./configureg whether the C compiler works... no
configure: error: in `/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3':
configure: error: C compiler cannot create executables
See `config.log' for more details
paulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$

paulo@paulo-OptiPlex-755:~/Área de Trabalho/pendriver/netcdf-4.1.3$ ./configure

>Obrigado

Sergio Benjamim · 09 de Janeiro de 2013, 12:24

Deve estar faltando dependência. Dá uma olhada no arquivo config.log criado aí dentro da pasta.

O compilador GCC está instalado? Procure por gcc na Central de Programas, ou entre com sudo apt-get install gcc em um terminal.

araujofilhoecology · 09 de Janeiro de 2013, 12:51

Olhei e tem o gcc instalado e o f90 também.
Mas não to conseguindo fazer nada...
Tenho que instalar um modelo, mas preciso do GFortran 77 e NetCDF.

Sergio Benjamim · 09 de Janeiro de 2013, 13:00

Citação de: araujofilhoecology online 09 de Janeiro de 2013, 12:51
Olhei e tem o gcc instalado e o f90 também.
Mas não to conseguindo fazer nada...
Tenho que instalar um modelo, mas preciso do GFortran 77 e NetCDF.

Tá, mas vc olhou o config.log? tem maiores detalhes lá.

araujofilhoecology · 09 de Janeiro de 2013, 13:23

Olhei e tem isso....

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.1.3, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure

## --------- ##
## Platform. ##
## --------- ##

hostname = paulo-OptiPlex-755
uname -m = i686
uname -r = 3.5.0-21-generic
uname -s = Linux
uname -v = #32-Ubuntu SMP Tue Dec 11 18:52:46 UTC 2012

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/intel/versao/bin
PATH: /usr/lib/lightdm/lightdm
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3070: netCDF 4.1.3
configure:3110: checking build system type
configure:3124: result: i686-pc-linux-gnu
configure:3144: checking host system type
configure:3157: result: i686-pc-linux-gnu
configure:3179: checking target system type
configure:3192: result: i686-pc-linux-gnu
configure:3243: checking for a BSD-compatible install
configure:3311: result: /usr/bin/install -c
configure:3322: checking whether build environment is sane
configure:3372: result: yes
configure:3513: checking for a thread-safe mkdir -p
configure:3552: result: /bin/mkdir -p
configure:3565: checking for gawk
configure:3581: found /usr/bin/gawk
configure:3592: result: gawk
configure:3603: checking whether make sets $(MAKE)
configure:3625: result: yes
configure:3709: checking user options
configure:3719: checking whether CXX is set to ''
configure:3723: result: no
configure:3727: checking whether FC is set to ''
configure:3731: result: no
configure:3735: checking whether F90 is set to ''
configure:3739: result: no
configure:3743: checking whether a NCIO_MINBLOCKSIZE was specified
configure:3753: result: 256
configure:3761: checking whether udunits is to be built
configure:3770: result: no
configure:3773: checking if fsync support is enabled
configure:3781: result: yes
configure:3790: checking whether extra valgrind tests should be run
configure:3798: result: no
configure:3802: checking whether we should try to build netCDF-4
configure:3810: result: yes
configure:3827: checking whether libcf is to be built
configure:3836: result: no
configure:3840: checking whether reading of HDF4 SD files is to be enabled
configure:3848: result: no
configure:3852: checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)
configure:3865: result: no
configure:3869: checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled
configure:3877: result: no
configure:3881: checking whether new netCDF-4 C++ API is to be built
configure:3892: result: no
configure:3896: checking whether extra example tests should be run
configure:3904: result: no
configure:3908: checking whether parallel IO tests should be run
configure:3916: result: no
configure:3920: checking whether a default chunk size in bytes was specified
configure:3930: result: 4194304
configure:3939: checking whether a maximum per-variable cache size for HDF5 was specified
configure:3949: result: 67108864
configure:3958: checking whether a number of chunks for the default per-variable cache was specified
configure:3968: result: 10
configure:3977: checking whether a default file cache size for HDF5 was specified
configure:3987: result: 4194304
configure:3996: checking whether a default file cache maximum number of elements for HDF5 was specified
configure:4006: result: 1009
configure:4015: checking whether a default cache preemption for HDF5 was specified
configure:4025: result: 0.75
configure:4034: checking whether netCDF-4 logging is enabled
configure:4042: result: no
configure:4046: checking whether cdmremote client is to be built
configure:4056: result: no
configure:4060: checking whether DAP client is to be built
configure:4068: result: yes
configure:4095: checking for style of include used by make
configure:4123: result: GNU
configure:4193: checking for gcc
configure:4220: result: icc
configure:4449: checking for C compiler version
configure:4458: icc --version >&5
./configure: line 4460: icc: command not found
configure:4469: $? = 127
configure:4458: icc -v >&5
./configure: line 4460: icc: command not found
configure:4469: $? = 127
configure:4458: icc -V >&5
./configure: line 4460: icc: command not found
configure:4469: $? = 127
configure:4458: icc -qversion >&5
./configure: line 4460: icc: command not found
configure:4469: $? = 127
configure:4489: checking whether the C compiler works
configure:4511: icc -03 -xP -ip conftest.c >&5
./configure: line 4513: icc: command not found
configure:4515: $? = 127
configure:4553: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.1.3"
| #define PACKAGE_STRING "netCDF 4.1.3"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.1.3"
| #define NCIO_MINBLOCKSIZE 256
| #define USE_FSYNC 1
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:4558: error: in `/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3':
configure:4560: error: C compiler cannot create executables
See `config.log' for more details

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-linux-gnu
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=icc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-03 -xP -ip'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=i686-pc-linux-gnu
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_ac_ct_CC=icc
ac_cv_prog_make_make_set=yes
ac_cv_target=i686-pc-linux-gnu

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run aclocal-1.11'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run tar'
AR=''
AS=''
AUTOCONF='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run autoconf'
AUTOHEADER='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run autoheader'
AUTOMAKE='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run automake-1.11'
AWK='gawk'
BINFILE_NAME=''
BUILD_BENCHMARKS_FALSE=''
BUILD_BENCHMARKS_TRUE=''
BUILD_CDMREMOTE_FALSE=''
BUILD_CDMREMOTE_TRUE=''
BUILD_CXX4_FALSE=''
BUILD_CXX4_TRUE=''
BUILD_CXX_FALSE=''
BUILD_CXX_TRUE=''
BUILD_C_FALSE=''
BUILD_C_TRUE=''
BUILD_DAP_FALSE=''
BUILD_DAP_TRUE=''
BUILD_DLL_FALSE=''
BUILD_DLL_TRUE=''
BUILD_EXAMPLES_FALSE=''
BUILD_EXAMPLES_TRUE=''
BUILD_F77_FALSE=''
BUILD_F77_TRUE=''
BUILD_F90_FALSE=''
BUILD_F90_TRUE=''
BUILD_LIBCF_FALSE=''
BUILD_LIBCF_TRUE=''
BUILD_PARALLEL_FALSE=''
BUILD_PARALLEL_TRUE=''
BUILD_UDUNITS_FALSE=''
BUILD_UDUNITS_TRUE=''
BUILD_UTILITIES_FALSE=''
BUILD_UTILITIES_TRUE=''
BUILD_V2_FALSE=''
BUILD_V2_TRUE=''
CC='icc'
CCDEPMODE=''
CFLAGS='-03 -xP -ip'
CPP=''
CPPFLAGS=''
CROSS_COMPILING_FALSE=''
CROSS_COMPILING_TRUE=''
CXX=''
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=''
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL=''
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENABLE_DAP_LONG_TESTS_FALSE=''
ENABLE_DAP_LONG_TESTS_TRUE=''
ENABLE_DAP_REMOTE_TESTS_FALSE=''
ENABLE_DAP_REMOTE_TESTS_TRUE=''
EXEEXT=''
EXTRA_EXAMPLE_TESTS_FALSE=''
EXTRA_EXAMPLE_TESTS_TRUE=''
EXTRA_TESTS_FALSE=''
EXTRA_TESTS_TRUE=''
F77=''
FC=''
FCFLAGS=''
FCFLAGS_f90=''
FFLAGS=''
FGREP=''
FTPBINDIR=''
GREP=''
HAS_CXX=''
HAS_DAP=''
HAS_F77=''
HAS_F90=''
HAS_HDF4=''
HAS_HDF5=''
HAS_NC2=''
HAS_NC4=''
HAS_PNETCDF=''
HAS_SZLIB=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INTERNAL_OCLIB_FALSE=''
INTERNAL_OCLIB_TRUE=''
LARGE_FILE_TESTS_FALSE=''
LARGE_FILE_TESTS_TRUE=''
LD=''
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL=''
LIPO=''
LN_S=''
LTLIBOBJS=''
MAKEINFO='${SHELL} "/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/missing" --run makeinfo'
MANIFEST_TOOL=''
MKDIR_P='/bin/mkdir -p'
MOD_FLAG=''
NC_FLIBS=''
NC_LIBS=''
NM=''
NMEDIT=''
NMFLAGS=''
OBJDUMP=''
OBJEXT=''
OTOOL64=''
OTOOL=''
PACKAGE='netcdf'
PACKAGE_BUGREPORT='support-netcdf@unidata.ucar.edu'
PACKAGE_NAME='netCDF'
PACKAGE_STRING='netCDF 4.1.3'
PACKAGE_TARNAME='netcdf'
PACKAGE_URL=''
PACKAGE_VERSION='4.1.3'
PATH_SEPARATOR=':'
RANLIB=''
SED=''
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
TEST_F77_FALSE=''
TEST_F77_TRUE=''
TEST_PARALLEL_FALSE=''
TEST_PARALLEL_TRUE=''
UPPER_CASE_MOD_FALSE=''
UPPER_CASE_MOD_TRUE=''
USE_DAP_FALSE=''
USE_DAP_TRUE=''
USE_DISPATCH_FALSE=''
USE_DISPATCH_TRUE=''
USE_FFIO_FALSE=''
USE_FFIO_TRUE=''
USE_HDF4_FALSE=''
USE_HDF4_FILE_TESTS_FALSE=''
USE_HDF4_FILE_TESTS_TRUE=''
USE_HDF4_TRUE=''
USE_LOGGING_FALSE=''
USE_LOGGING_TRUE=''
USE_NETCDF4_FALSE=''
USE_NETCDF4_TRUE=''
USE_PNETCDF_DIR_FALSE=''
USE_PNETCDF_DIR_TRUE=''
USE_PNETCDF_FALSE=''
USE_PNETCDF_TRUE=''
USE_RENAMEV3_FALSE=''
USE_RENAMEV3_TRUE=''
USE_SZIP_FALSE=''
USE_SZIP_TRUE=''
USE_VALGRIND_TESTS_FALSE=''
USE_VALGRIND_TESTS_TRUE=''
VERSION='4.1.3'
ac_ct_AR=''
ac_ct_CC='icc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} '\''/home/paulo/Área de Trabalho/pendriver/netcdf-4.1.3/install-sh'\'''
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target='i686-pc-linux-gnu'
target_alias=''
target_cpu='i686'
target_os='linux-gnu'
target_vendor='pc'

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "netCDF"
#define PACKAGE_TARNAME "netcdf"
#define PACKAGE_VERSION "4.1.3"
#define PACKAGE_STRING "netCDF 4.1.3"
#define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
#define PACKAGE_URL ""
#define PACKAGE "netcdf"
#define VERSION "4.1.3"
#define NCIO_MINBLOCKSIZE 256
#define USE_FSYNC 1
#define DEFAULT_CHUNK_SIZE 4194304
#define MAX_DEFAULT_CACHE_SIZE 67108864
#define DEFAULT_CHUNKS_IN_CACHE 10
#define CHUNK_CACHE_SIZE 4194304
#define CHUNK_CACHE_NELEMS 1009
#define CHUNK_CACHE_PREEMPTION 0.75

configure: exit 77

>Não entendo nada disso....

EdvaldoSCruz · 26 de Janeiro de 2013, 10:20

Clique aqui: Guia de instalação do NetCDF

Como instalar NetCDF? Estou tendo problemas na intalação .

araujofilhoecology

Sergio Benjamim

araujofilhoecology

Sergio Benjamim

araujofilhoecology

EdvaldoSCruz