Bom, segue resultado dos comandos...
root@repositorio:/# sudo apt-get autoremove
Lendo listas de pacotes... Pronto
Construindo árvore de dependências
Lendo informação de estado... Pronto
Você pode querer executar 'apt-get -f install' para corrigÃ-los.
Os pacotes a seguir têm dependências desencontradas:
apt : Depende: libapt-pkg4.11 (>= 0.8.16~exp5ubuntu13.2) mas 0.8.16~exp5ubuntu13 está instalado
apt-transport-https : Depende: libapt-pkg4.11 (>= 0.8.16~exp5ubuntu13.2) mas 0.8.16~exp5ubuntu13 está instalado
apt-utils : Depende: libapt-pkg4.11 (>= 0.8.16~exp5ubuntu13.2) mas 0.8.16~exp5ubuntu13 está instalado
bacula : Depende: bacula-common mas não está instalado
bacula-client : Depende: bacula-console (>= 5.0.3-1ubuntu5) mas não está instalado
Depende: bacula-fd (>= 5.0.3-1ubuntu5) mas não está instalado
bacula-common-mysql : Depende: bacula-common mas não está instalado
bacula-director-mysql : Depende: bacula-director-common (= 5.0.3-1ubuntu5) mas não está instalado
Depende: bacula-common mas não está instalado
bacula-server : Depende: bacula-sd (>= 5.0.3-1ubuntu5) mas não está instalado
Depende: bacula-sd-mysql (>= 5.0.3-1ubuntu5) mas não está instalado ou
bacula-sd-tools
Recomenda: bacula-fd mas não está instalado
E: Dependências desencontradas. Tente usar -f.
root@repositorio:/# apt-get autoclean
Lendo listas de pacotes... Pronto
Construindo árvore de dependências
Lendo informação de estado... Pronto
root@repositorio:/#
root@repositorio:/# apt-get update
41% [109 Packages xz 0 B] [Conectando a security.ubuntu.com] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:110
http://security.ubuntu.com oneiric-security/restricted amd64 Packages [1.936 B]
41% [110 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:111
http://security.ubuntu.com oneiric-security/universe amd64 Packages [1.936 B]
42% [111 Packages xz 0 B] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:112
http://security.ubuntu.com oneiric-security/multiverse amd64 Packages [1.936 B]
42% [112 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:113
http://security.ubuntu.com oneiric-security/main i386 Packages [1.936 B]
43% [113 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:114
http://security.ubuntu.com oneiric-security/restricted i386 Packages [1.936 B]
43% [114 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:115
http://security.ubuntu.com oneiric-security/universe i386 Packages [1.936 B]
44% [115 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Obter:116
http://security.ubuntu.com oneiric-security/multiverse i386 Packages [1.936 B]
44% [116 Packages xz 0 B] [Aguardando por cabeçalhos] 12,9 kB/s 9s/usr/bin/xz: (stdin): Formato de arquivo não reconhecido
Baixados 225 kB em 12s (17,9 kB/s)
W: Erro GPG:
http://br.archive.ubuntu.com oneiric InRelease: Arquivo /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_InRelease não inicia com mensagem assinada simples
W: Erro GPG:
http://br.archive.ubuntu.com oneiric-updates InRelease: Arquivo /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_InRelease não inicia com mensagem assinada simples
W: Erro GPG:
http://br.archive.ubuntu.com oneiric-backports InRelease: Arquivo /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_InRelease não inicia com mensagem assinada simples
W: Erro GPG:
http://security.ubuntu.com oneiric-security InRelease: Arquivo /var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_InRelease não inicia com mensagem assinada simples
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric/main/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_main_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric/multiverse/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_multiverse_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric/restricted/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_restricted_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric/universe/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_universe_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-updates/main/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_main_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-updates/multiverse/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_multiverse_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-updates/restricted/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_restricted_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-updates/universe/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_universe_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-backports/main/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_main_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-backports/multiverse/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_multiverse_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-backports/restricted/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_restricted_i18n_Index
W: Falhou ao buscar
http://br.archive.ubuntu.com/ubuntu/dists/oneiric-backports/universe/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_universe_i18n_Index
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_main_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_restricted_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_universe_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_multiverse_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_main_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_restricted_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_universe_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_multiverse_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_main_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_restricted_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_universe_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric_multiverse_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_main_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_restricted_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_universe_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_multiverse_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_main_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_restricted_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_universe_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_multiverse_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_main_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_restricted_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_universe_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-updates_multiverse_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_main_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_restricted_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_universe_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_multiverse_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_main_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_restricted_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_universe_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_multiverse_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_main_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_restricted_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_universe_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/br.archive.ubuntu.com_ubuntu_dists_oneiric-backports_multiverse_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar
http://security.ubuntu.com/ubuntu/dists/oneiric-security/main/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_main_i18n_Index
W: Falhou ao buscar
http://security.ubuntu.com/ubuntu/dists/oneiric-security/multiverse/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_multiverse_i18n_Index
W: Falhou ao buscar
http://security.ubuntu.com/ubuntu/dists/oneiric-security/restricted/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_restricted_i18n_Index
W: Falhou ao buscar
http://security.ubuntu.com/ubuntu/dists/oneiric-security/universe/i18n/Index Sem hash no arquivo de publicação /var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_universe_i18n_Index
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_main_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_restricted_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_universe_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_multiverse_source_Sources Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_main_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_restricted_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_universe_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_multiverse_binary-amd64_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_main_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_restricted_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_universe_binary-i386_Packages Encountered a section with no Package: header
W: Falhou ao buscar gzip:/var/lib/apt/lists/partial/security.ubuntu.com_ubuntu_dists_oneiric-security_multiverse_binary-i386_Packages Encountered a section with no Package: header
E: Alguns arquivos index falharam ao ser baixados. Eles foram ignorados, ou cópias antigas são usadas ao invés.
Agora, outra coisa, vc sugeriu pra ir em canais de software e trocar o servidor principal, mas como eu faço isso no ubuntu server ?
A minha pasta partitial esta limpa ja
root@repositorio:/var/lib/apt/lists/partial# ls
root@repositorio:/var/lib/apt/lists/partial#